Posit Connect (formerly RStudio Connect) will be presenting an overview of workflows with R, R Markdown, Flexdashboard, and Shiny. This short course will provide an introduction to flexible and powerful tools for statistical analysis, reproducible research and interactive visualizations. This session will provide an overview of how to build R Markdown and Shiny applications and […]
O2 Portal is web-based access point to O2 powered by Open OnDemand. This short training teaches you the basic functions of O2 Portal, including file transfer, Slurm job submission and monitoring desktop activities and a few popular applications such as Matlab, Jupyter and Rstudio. Audience: Anyone interested in using the O2 resources for their projects Pre-Requisites: Familiarity […]
This workshop introduces general principles in image processing and analysis, as well as practical implementations in ImageJ/Fiji. If you are already somewhat advanced (you code your own workflows), this level is perhaps not for you. You will need a laptop with a decent size screen and admin privileges in order to participate. Topics covered include: […]
Access to tools and computational resources for large-scale data analysis often require knowledge of the command-line interface (also referred to as Unix or Linux or bash or shell). In this 3-day hands-on workshop participants will learn the following: basic shell commands for navigating the file system, exploring file contents, performing basic operations, such as moving, copying, and […]
Access to tools and computational resources for large-scale data analysis often require knowledge of the command-line interface (also referred to as Unix or Linux or bash or shell). In this 3-day […]
This is a short introduction to Parallel Computing that will include an overview of the basic concepts of parallel programming: from running your job in an embarrassingly parallel way to […]
Whether you’re motivated by the joy-sparking tidying up of Marie Kondo, or get inspired by a good old-fashioned spring-cleaning spree, now is a great time to clean up your data. The time you spend doing a good data cleanup will more than pay off in increased efficiency in your workflows and project time. This session will […]
This workshop introduces general principles in image processing and analysis, as well as practical implementations in ImageJ/Fiji. If you are already somewhat advanced (you code your own workflows), this level is perhaps not for you. You will need a laptop with a decent size screen and admin privileges in order to participate. Topics covered include: […]
Access to tools and computational resources for large-scale data analysis often require knowledge of the command-line interface (also referred to as Unix or Linux or bash or shell). In this 3-day […]
This is a hands-on workshop designed for those who have no or little prior experience with Quarto. Quarto is the next generation of RMarkdown for publishing, including dynamic and static documents and multi-lingual programming language support. With Quarto you can create documents, books, presentations, blogs or other online resources. This workshop will be appropriate for […]
This is a short introduction to Parallel Computing that will include an overview of the basic concepts of parallel programming: from running your job in an embarrassingly parallel way to writing simple shared and distributed memory parallelization codes in different languages. The seminar will cover several examples of actual parallel codes however it will not […]
During this online hands-on workshop, participants will learn: • How to design a bulk RNA-seq experiment • The steps involved in taking raw RNA-sequencing data (Illumina) and generating a count […]
During this online hands-on workshop, participants will learn: • How to design a bulk RNA-seq experiment • The steps involved in taking raw RNA-sequencing data (Illumina) and generating a count (gene expression) matrix • How to compute and assess QC metrics at every step in the workflow • How to automate a simple workflow on […]
In this short seminar we cover some simple but essential rules to use the O2 cluster in the most efficient (and inexpensive) way. Audience: Anyone running jobs in the O2 cluster […]
A 2-page Data Management Plan (DMP) is now required as part of the new NIH Data Management & Sharing Policy. The Plan will set you up for long-term research success. The DMPTool is web-based and provides basic templates that can help you construct data management plans. The DMPTool provides you with templates, funder mandates, institutional […]
This year’s annual symposium will focus on recent efforts by quantitative scientists to better understand the complex mechanisms that contribute to health disparities and to develop interventions to reduce or […]
During this online hands-on workshop, participants will learn: • How to design a bulk RNA-seq experiment • The steps involved in taking raw RNA-sequencing data (Illumina) and generating a count […]
The course will cover all levels of MS data, from raw data to identification and quantitation data, up to the statistical interpretation of a typical shotgun MS experiment and will focus on hands-on tutorials. At the end of this course, the participants will be able to manipulate MS data in R and use existing packages […]
The course will cover all levels of MS data, from raw data to identification and quantitation data, up to the statistical interpretation of a typical shotgun MS experiment and will focus on hands-on tutorials. At the end of this course, the participants will be able to manipulate MS data in R and use existing packages […]
The course will cover all levels of MS data, from raw data to identification and quantitation data, up to the statistical interpretation of a typical shotgun MS experiment and will focus on hands-on tutorials. At the end of this course, the participants will be able to manipulate MS data in R and use existing packages […]
Python is a popular scripting language for scientific computing and available across all computer platforms. The course will introduce you to some of the basics of the Python language as […]