Title: CCB Seminar Series Speaker: Trevor Manz, PhD Candidate & NSF Research Fellow, DBMI HMS Topic: Interactive, web-based visualization of high-resolution multiplexed bioimaging data Abstract: Although the rapid innovation of biological […]
Course requirements: Mandatory attendance for all three classes 3-5 hours of reading and exercises from selected lessons before each workshop session Active participation during discussion sessions
Open Scholarship advocates for research to be transparent and openly available to all. In this workshop, we’ll give an overview of the Open Science movement and the general principles including […]
Course requirements: Mandatory attendance for all three classes 3-5 hours of reading and exercises from selected lessons before each workshop session Active participation during discussion sessions
Finding data to reuse for your own research is often challenging because it can be widely distributed across a large number of different repositories and websites, it may not be […]
This workshop covers essential concepts in fluorescence microscopy, including: the fluorescence microscope light path filters and wavelength selection light sources for fluorescence optical resolution objective lenses sample prep tips
Matlab has become the “language of science” in the past few decades. It is simple to use, yet powerful enough to be productive on large computing infrastructures. If you need: […]
Data sharing is becoming an increasingly prevalent and expected part of the research process. Researchers may be hesitant to share datasets about human subjects, and rightfully so. While some data […]
Course requirements: Mandatory attendance for all three classes 3-5 hours of reading and exercises from selected lessons before each workshop session Active participation during discussion sessions
This workshop focuses on a critical part of every microscope: the detector. Understanding the detector is crucial to understanding microscopy data, especially if you are making measurements on that data. […]
Matlab has become the “language of science” in the past few decades. It is simple to use, yet powerful enough to be productive on large computing infrastructures. If you need: […]
Posit Connect (formerly RStudio Connect) will be presenting an overview of workflows with R, R Markdown, Flexdashboard, and Shiny. This short course will provide an introduction to flexible and powerful tools for statistical analysis, reproducible research and interactive visualizations. This session will provide an overview of how to build R Markdown and Shiny applications and […]
O2 Portal is web-based access point to O2 powered by Open OnDemand. This short training teaches you the basic functions of O2 Portal, including file transfer, Slurm job submission and monitoring desktop activities and a few popular applications such as Matlab, Jupyter and Rstudio. Audience: Anyone interested in using the O2 resources for their projects Pre-Requisites: Familiarity […]
This workshop introduces general principles in image processing and analysis, as well as practical implementations in ImageJ/Fiji. If you are already somewhat advanced (you code your own workflows), this level is perhaps not for you. You will need a laptop with a decent size screen and admin privileges in order to participate. Topics covered include: […]
Access to tools and computational resources for large-scale data analysis often require knowledge of the command-line interface (also referred to as Unix or Linux or bash or shell). In this 3-day hands-on workshop participants will learn the following: basic shell commands for navigating the file system, exploring file contents, performing basic operations, such as moving, copying, and […]