Intro to Parallel Computing
TMEC 328This is a short introduction to Parallel Computing that will include an overview of the basic concepts of parallel programming: from running your job in an embarrassingly parallel way to […]
Events
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Spring Cleaning for Your Data
Whether you’re motivated by the joy-sparking tidying up of Marie Kondo, or get inspired by a good old-fashioned spring-cleaning spree, now is a great time to clean up your data. […]
Introduction to Image Analysis with ImageJ/Fiji
This workshop introduces general principles in image processing and analysis, as well as practical implementations in ImageJ/Fiji. If you are already somewhat advanced (you code your own workflows), this level […]
Introduction to the Command-Line Interface (Shell, Bash, Unix, Linux) (2023)
Access to tools and computational resources for large-scale data analysis often require knowledge of the command-line interface (also referred to as Unix or Linux or bash or shell). In this 3-day […]
Quarto from Posit Connect
This is a hands-on workshop designed for those who have no or little prior experience with Quarto. Quarto is the next generation of RMarkdown for publishing, including dynamic and static […]
Intro to Parallel Computing
TMEC 328This is a short introduction to Parallel Computing that will include an overview of the basic concepts of parallel programming: from running your job in an embarrassingly parallel way to […]
HBC Current Topics in Bioinformatics – Advanced Shell
Pre-requisites: Shell and Intermediate Shell
Introduction to bulk RNA-seq Data Analysis(Part I)
During this online hands-on workshop, participants will learn: • How to design a bulk RNA-seq experiment • The steps involved in taking raw RNA-sequencing data (Illumina) and generating a count (gene expression) matrix • How to compute and assess QC metrics at every step in the workflow • How to automate a simple workflow on […]
Introduction to bulk RNA-seq Data Analysis(Part I)
During this online hands-on workshop, participants will learn: • How to design a bulk RNA-seq experiment • The steps involved in taking raw RNA-sequencing data (Illumina) and generating a count (gene expression) matrix • How to compute and assess QC metrics at every step in the workflow • How to automate a simple workflow on […]
Optimizing O2 Jobs
TMEC 328In this short seminar we cover some simple but essential rules to use the O2 cluster in the most efficient (and inexpensive) way. Audience: Anyone running jobs in the O2 cluster Prerequisites: Familiarity with the O2 cluster and the Slurm scheduler Cost: None Late Drop/Cancel Fee: None Please contact lingsheng_dong@hms.harvard.edu with any question.
Using the DMPTool to write a NIH Data Management and Sharing Plan
A 2-page Data Management Plan (DMP) is now required as part of the new NIH Data Management & Sharing Policy. The Plan will set you up for long-term research success. The DMPTool is web-based and provides basic templates that can help you construct data management plans. The DMPTool provides you with templates, funder mandates, institutional […]
Biostatistics Symposium: Data Science and Health Disparities
This year’s annual symposium will focus on recent efforts by quantitative scientists to better understand the complex mechanisms that contribute to health disparities and to develop interventions to reduce or […]