Intro to O2 Portal
O2 Portal is web-based access point to O2 powered by Open OnDemand. This short training teaches you the basic functions of O2 Portal, including file transfer, Slurm job submission and […]
Events
Loading view.
Introduction to Image Analysis with ImageJ/Fiji
This workshop introduces general principles in image processing and analysis, as well as practical implementations in ImageJ/Fiji. If you are already somewhat advanced (you code your own workflows), this level is perhaps not for you. You will need a laptop with a decent size screen and admin privileges in order to participate. Topics covered include: […]
Introduction to the Command-Line Interface (Shell, Bash, Unix, Linux) (2023)
Access to tools and computational resources for large-scale data analysis often require knowledge of the command-line interface (also referred to as Unix or Linux or bash or shell). In this 3-day hands-on workshop participants will learn the following: basic shell commands for navigating the file system, exploring file contents, performing basic operations, such as moving, copying, and […]
Introduction to the Command-Line Interface (Shell, Bash, Unix, Linux) (2023)
Access to tools and computational resources for large-scale data analysis often require knowledge of the command-line interface (also referred to as Unix or Linux or bash or shell). In this 3-day […]
Intro to Parallel Computing
TMEC 328This is a short introduction to Parallel Computing that will include an overview of the basic concepts of parallel programming: from running your job in an embarrassingly parallel way to writing simple shared and distributed memory parallelization codes in different languages. The seminar will cover several examples of actual parallel codes however it will not […]
Spring Cleaning for Your Data
Whether you’re motivated by the joy-sparking tidying up of Marie Kondo, or get inspired by a good old-fashioned spring-cleaning spree, now is a great time to clean up your data. […]
Introduction to Image Analysis with ImageJ/Fiji
This workshop introduces general principles in image processing and analysis, as well as practical implementations in ImageJ/Fiji. If you are already somewhat advanced (you code your own workflows), this level is perhaps not for you. You will need a laptop with a decent size screen and admin privileges in order to participate. Topics covered include: […]
Introduction to the Command-Line Interface (Shell, Bash, Unix, Linux) (2023)
Access to tools and computational resources for large-scale data analysis often require knowledge of the command-line interface (also referred to as Unix or Linux or bash or shell). In this 3-day […]
Quarto from Posit Connect
This is a hands-on workshop designed for those who have no or little prior experience with Quarto. Quarto is the next generation of RMarkdown for publishing, including dynamic and static documents and multi-lingual programming language support. With Quarto you can create documents, books, presentations, blogs or other online resources. This workshop will be appropriate for […]
Intro to Parallel Computing
TMEC 328This is a short introduction to Parallel Computing that will include an overview of the basic concepts of parallel programming: from running your job in an embarrassingly parallel way to writing simple shared and distributed memory parallelization codes in different languages. The seminar will cover several examples of actual parallel codes however it will not […]
HBC Current Topics in Bioinformatics – Advanced Shell
Pre-requisites: Shell and Intermediate Shell
Introduction to bulk RNA-seq Data Analysis(Part I)
During this online hands-on workshop, participants will learn: • How to design a bulk RNA-seq experiment • The steps involved in taking raw RNA-sequencing data (Illumina) and generating a count (gene expression) matrix • How to compute and assess QC metrics at every step in the workflow • How to automate a simple workflow on […]