Rafael Goncalves, PhD

Rafael Goncalves, PhD
Associate Director of Knowledge Representation
Center for Computational Biomedicine
Harvard Medical School
Publications
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Visualising the effects of ontology changes and studying their understanding with ChImp
Authors: Romana Pernisch, Daniele Dell’Aglio, Mirko Serbak, Rafael S. Gonçalves, Abraham Bernstein
Journal of Web Semantics, Volume 74, October 2022, 100715
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Obstacles to the reuse of study metadata in ClinicalTrials.gov
Authors: Laura Miron, Rafael S. Gonçalves, Mark A. Musen
Scientific Data, 2020
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The variable quality of metadata about biological samples used in biomedical experiments.
Authors: Rafael S. Gonçalves, Mark A. Musen
Scientific Data, 2019
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Use of OWL and Semantic Web Technologies at Pinterest
Authors: Rafael S. Gonçalves, Matthew Horridge, Rui Li, Yu Liu, Mark A. Musen, Csongor I. Nyulas, Evelyn Obamos, Dhananjay Shrouty, David Temple
The Semantic Web – ISWC 2019. Lecture Notes in Computer Science, vol. 11779, 2019
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WebProtégé: A Cloud-Based Ontology Editor
Authors: Matthew Horridge, Rafael S. Gonçalves, Csongor I. Nyulas, Tania Tudorache, Mark A. Musen
Companion Proceedings of The 2019 World Wide Web Conference, 2019
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Aligning Biomedical Metadata with Ontologies Using Clustering and Embeddings
Authors: Rafael S. Gonçalves, Maulik R. Kamdar, Mark A. Musen
The Semantic Web – ESWC 2019. Lecture Notes in Computer Science, vol. 11503, 2019
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Protégé 5.5-Improvements for Editing Biomedical Ontologies.
Authors: Matthew Horridge, Rafael S. Gonçalves, Csongor I. Nyulas, Tania Tudorache, Mark A. Musen
Proc. of the 9th International Conference on Biological Ontology (ICBO), 2018.
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The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments.
Authors: Rafael S. Gonçalves, Martin J. O’Connor, Marcos Martínez-Romero, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen
The Semantic Web – ISWC 2017. Lecture Notes in Computer Science, vol. 10588, 2017
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The OWL Reasoner Evaluation (ORE) 2015 Competition Report
Authors: Bijan Parsia, Nicolas Matentzoglu, Rafael S. Gonçalves, Birte Glimm, Andreas Steigmiller
Journal of Automated Reasoning, 2017
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An ontology-driven tool for structured data acquisition using Web forms
Authors: Rafael S. Gonçalves, Samson W. Tu, Csongor I. Nyulas, Michael J. Tierney, Mark A. Musen
Journal of Biomedical Semantics, 2017
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The OWL Reasoner Evaluation (ORE) 2015 Resources
Authors: Bijan Parsia, Nicolas Matentzoglu, Rafael S. Gonçalves, Birte Glimm, Andreas Steigmiller
The Semantic Web – ISWC 2016. Lecture Notes in Computer Science, vol. 9982, 2016
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Finding Fault: Detecting Issues in a Versioned Ontology.
Authors: Maria Copeland, Rafael S. Gonçalves, Bijan Parsia, Uli Sattler & Robert Stevens
The Semantic Web – ESWC 2013. Lecture Notes in Computer Science, vol. 7955, 2013
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The Empirical Robustness of Description Logic Classification.
Authors: Rafael S Gonçalves, Nicolas Matentzoglu, Bijan Parsia, Uli Sattler
Proc. of the 26th International Workshop on Description Logics (DL), 2013
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Performance heterogeneity and approximate reasoning in description logic ontologies
Authors: Rafael S. Gonçalves, Bijan Parsia, Ulrike Sattler
The Semantic Web – ISWC 2012. Lecture Notes in Computer Science, vol. 7649, 2012
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Concept-Based Semantic Difference in Expressive Description Logics
Authors: Rafael S. Gonçalves, Bijan Parsia, Ulrike Sattler
The Semantic Web – ISWC 2012. Lecture Notes in Computer Science, vol. 7649, 2012
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Analysing the evolution of the NCI thesaurus.
Authors: Rafael S. Gonçalves, Bijan Parsia, Uli Sattler
Proc. of the 24th IEEE International Symposium on Computer-Based Medical Systems (CBMS), 2011