Rafael Goncalves, PhD

Rafael Goncalves, PhD

Associate Director

Center for Computational Biomedicine

Harvard Medical School

Publications

  • Visualising the effects of ontology changes and studying their understanding with ChImp

    Authors: Romana Pernisch, Daniele Dell’Aglio, Mirko Serbak, Rafael S. Gonçalves, Abraham Bernstein

    Journal of Web Semantics, Volume 74, October 2022, 100715

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  • Obstacles to the reuse of study metadata in ClinicalTrials.gov

    Authors: Laura Miron, Rafael S. Gonçalves, Mark A. Musen

    Scientific Data, 2020

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  • The variable quality of metadata about biological samples used in biomedical experiments.

    Authors: Rafael S. Gonçalves, Mark A. Musen

    Scientific Data, 2019

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  • Use of OWL and Semantic Web Technologies at Pinterest

    Authors: Rafael S. Gonçalves, Matthew Horridge, Rui Li, Yu Liu, Mark A. Musen, Csongor I. Nyulas, Evelyn Obamos, Dhananjay Shrouty, David Temple

    The Semantic Web – ISWC 2019. Lecture Notes in Computer Science, vol. 11779, 2019

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  • WebProtégé: A Cloud-Based Ontology Editor

    Authors: Matthew Horridge, Rafael S. Gonçalves, Csongor I. Nyulas, Tania Tudorache, Mark A. Musen

    Companion Proceedings of The 2019 World Wide Web Conference, 2019

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  • Aligning Biomedical Metadata with Ontologies Using Clustering and Embeddings

    Authors: Rafael S. Gonçalves, Maulik R. Kamdar, Mark A. Musen

    The Semantic Web – ESWC 2019. Lecture Notes in Computer Science, vol. 11503, 2019

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  • Protégé 5.5-Improvements for Editing Biomedical Ontologies.

    Authors: Matthew Horridge, Rafael S. Gonçalves, Csongor I. Nyulas, Tania Tudorache, Mark A. Musen

    Proc. of the 9th International Conference on Biological Ontology (ICBO), 2018.

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  • The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments.

    Authors: Rafael S. Gonçalves, Martin J. O’Connor, Marcos Martínez-Romero, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen

    The Semantic Web – ISWC 2017. Lecture Notes in Computer Science, vol. 10588, 2017

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  • The OWL Reasoner Evaluation (ORE) 2015 Competition Report

    Authors: Bijan Parsia, Nicolas Matentzoglu, Rafael S. Gonçalves, Birte Glimm, Andreas Steigmiller

    Journal of Automated Reasoning, 2017

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  • An ontology-driven tool for structured data acquisition using Web forms

    Authors: Rafael S. Gonçalves, Samson W. Tu, Csongor I. Nyulas, Michael J. Tierney, Mark A. Musen

    Journal of Biomedical Semantics, 2017

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  • The OWL Reasoner Evaluation (ORE) 2015 Resources

    Authors: Bijan Parsia, Nicolas Matentzoglu, Rafael S. Gonçalves, Birte Glimm, Andreas Steigmiller

    The Semantic Web – ISWC 2016. Lecture Notes in Computer Science, vol. 9982, 2016

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  • Finding Fault: Detecting Issues in a Versioned Ontology.

    Authors: Maria Copeland, Rafael S. Gonçalves, Bijan Parsia, Uli Sattler & Robert Stevens

    The Semantic Web – ESWC 2013. Lecture Notes in Computer Science, vol. 7955, 2013

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  • The Empirical Robustness of Description Logic Classification.

    Authors: Rafael S Gonçalves, Nicolas Matentzoglu, Bijan Parsia, Uli Sattler

    Proc. of the 26th International Workshop on Description Logics (DL), 2013

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  • Performance heterogeneity and approximate reasoning in description logic ontologies

    Authors: Rafael S. Gonçalves, Bijan Parsia, Ulrike Sattler

    The Semantic Web – ISWC 2012. Lecture Notes in Computer Science, vol. 7649, 2012

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  • Concept-Based Semantic Difference in Expressive Description Logics

    Authors: Rafael S. Gonçalves, Bijan Parsia, Ulrike Sattler

    The Semantic Web – ISWC 2012. Lecture Notes in Computer Science, vol. 7649, 2012

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  • Analysing the evolution of the NCI thesaurus.

    Authors: Rafael S. Gonçalves, Bijan Parsia, Uli Sattler

    Proc. of the 24th IEEE International Symposium on Computer-Based Medical Systems (CBMS), 2011

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