Archives

Intro to Git and GitHub

TMEC 328

This course introduces Git and GitHub and covers topics including: Getting Started with Git for version control, Using GitHub Desktop effectively, Collaborating with others on GitHub, and Utilizing GitHub Flow […]

RCBio: Easy and Quick HPC Pipeline Builder and Runner

TMEC 328

RCBio is a HPC pipeline runner and workflow tool supported by HMS RC consultants. It was first designed for a Neubiology lab and later opened to all O2 users. RCBio helps users to quickly build and run multiple steps data analysis pipeline on a computer cluster. RCBio automatically keeps logs on all job status and […]

Intro to Python

TMEC 328

Python is a popular scripting language for scientific computing and available across all computer platforms. The course will introduce you to some of the basics of the Python language as well as some of the nuances involved with its use specific to the O2 environment. The goal is to provide users with a foundational level […]

Intermediate O2

TMEC 328

Intermediate O2 is for current O2 users who would like to brush up on their bash skills, learn more advanced file transfer techniques, and unleash some of the powerful features of the SLURM scheduler." Prerequisites: Intro to O2 or proficiency on the O2 cluster

Where Should I Put My Data? Understanding Data Storage at HMS

TMEC 328

As research grows increasingly more complex, arrangements for data storage and transmission of research data require continuous review and modification. Data storage encompasses not only the specific location where data will be kept and managed, but also aspects of data privacy, data security, data organization, and eventual sharing or reuse. During this short training seminar, […]

Intro to O2 Portal

TMEC 328

O2 Portal is web-based access point to O2 powered by Open OnDemand. This short training teaches you the basic functions of O2 Portal, including file transfer, Slurm job submission and monitoring desktop activities and a few popular applications such as Matlab, Jupyter and Rstudio. Audience: Anyone interested in using the O2 resources for their projects Pre-Requisites: Familiarity […]

Intro to O2

TMEC 328

Intro to O2 addresses the needs of users who have very little linux experience, and are just getting started with HPC. Time will be devoted to covering linux basics, and […]

Event Series Intro to Python

Intro to Python

TMEC 328

Python is a popular scripting language for scientific computing and available across all computer platforms. The course will introduce you to some of the basics of the Python language as well as some of the nuances involved with its use specific to the O2 environment. The goal is to provide users with a foundational level […]

Event Series Intro to Python

Intro to Python

TMEC 328

Python is a popular scripting language for scientific computing and available across all computer platforms. The course will introduce you to some of the basics of the Python language as well as some of the nuances involved with its use specific to the O2 environment. The goal is to provide users with a foundational level […]

Optimizing O2 Jobs

TMEC 328

In this short seminar we cover some simple but essential rules to use the O2 cluster in the most efficient (and inexpensive) way. Audience: Anyone running jobs in the O2 cluster […]