Past CCB Seminars

May 2022 Seminars

Speaker: Katy Börner, Victor H. Yngve Distinguished Professor of Intelligent Systems Engineering, Indiana University

Title: Human Reference Atlas Construction and Usage

Recording: Click here

Speaker: Robert Hoehndorf, King Abdullah University of Science and Technology

Title: Semantic Similarity and Machine Learning with Ontologies

Recording: Click here

Speaker: Jaclyn Mallard, CCB Center Administrator

Title: Filling in the Gaps: CCB’s Role in Quantitative Education at HMS

Recording: Click here

April 2022 Seminars

Date: April 4th, 2022

Speaker: Fabian Theis, Institute Director and Research Group Leader and Giovanni Palla, PhD Candidate at Helmholtz Munich

Title: Squidpy: A Scalable Framework for Spatial Omics Analysis

Recording: Click Here

Date: April 11th, 2022

Speaker: Vincent Carey, Professor of Medicine at HMS and Associate Biostatistician at Channing Laboratory, Brigham And Women’s Hospital

Title: Open Computational eCosystems for Modern Genomics

Recording: Click Here

Date: April 18th, 2022

Speaker: Artem Sokolov, HMS DBMI

Title: A Scalable, Modular Image-processing Pipeline for Multiplexed Tissue Imaging

Recording: Click Here

Speaker: Constantin Ahlmann-Eltze (European Molecular Biology Laboratory, Heidelberg, Germany)

Title: Transformation and Preprocessing of Single-Cell RNA-Seq Data

Recording: Click Here

March 2022 Seminars

Date: March 7th, 2022

Speaker: Nitesh Turaga, Scientist in the Department of Data Science, at the Dana Farber Cancer Institute of Harvard Medical School and a Core Team member at the Bioconductor Project, working at the intersection of Data Science, Computational biology, and Software Engineering

Title: Containerized and Parallel Computation in R/Bioconductor

Recording: N/A

Date: March 14th, 2022

Speaker: Paul Macklin, Associate Professor and Director of Undergraduate Studies in the Department of Intelligent Systems Engineering at Indiana University

Title: The Human Body at Cellular Resolution: the NIH Human Biomolecular Atlas Program

Recording: Click Here

Date: March 28th, 2022

Speaker: Nils Eling, Postdoctoral Researcher at the Bodenmiller Laboratory at the University of Zurich

Title: Visualization and Analysis of Highly Multiplexed Imaging Data

Recording: Click Here


February 2022 Seminars

Date: February 7th, 2022

Speaker: Sean Maden, Ph.D candidate in Computational Biology. Biomedical Engineering Dept (OHSU)

Title: Human Methylome Variation Across Infinium 450K Data on the Gene Expression Omnibus

Recording: N/A


Date: February 14th, 2022

Speaker: Marinka Zitnik, Assistant Professor of Biomedical Informatics, Harvard Medical School

Title: Leveraging the Cell Ontology to Classify Unseen Cell Types

Recording: Click Here


Date: February 28th, 2022

Speaker: Levi Waldron, Associate Professor of Biostatistics at CUNY Graduate School of Public Health and Health Policy

Title: Curated Single Cell Multimodal Landmark Datasets for R/Bioconductor

Recording: Click Here

January 2022 Seminars

Date: January 24th, 2022

Speaker(s): Allon Klein, Assistant Professor of Systems Biology at HMS and Sahand Hormoz, Assistant Professor of Systems Biology at HMS

Title: Atlas of Human Population Variation in Bone Marrow Hematopoiesis

Recording: N/A

Date: January 31st, 2022

Speaker(s): Helena Crowell, PhD Candidate at University of Zurich and Dario Righelli, Assistant Researcher at Department of Statistics,University of Padua 

Title: Orchestrating Spatially Resolved Transcriptomics Analysis with Bioconductor

Recording:  Click Here